Wonders

Key research papers on antimicrobial resistance

Mechanisms, global burden, biofilms, resistance gene databases and One Health: the antimicrobial resistance papers cited most, with search strings.

Data from OpenAlex, retrieved September 21, 2026

In short

Antimicrobial resistance (AMR) research ranges from molecular microbiology to global health policy. For mechanisms, read Blair et al. (2015) and its 2023 successor by Darby et al. For origins, Davies and Davies (2010). For the scale of the problem, Murray et al. (2022) estimated the deaths associated with and attributable to bacterial AMR in 2019. For policy, Laxminarayan et al. (2013).

How the literature is organised

The literature divides by scale. At the molecular level, the questions are how resistance arises and spreads. Davies and Davies (2010) trace the origins and evolution of resistance since antibiotics were introduced. Blair et al. (2015) review mechanisms: preventing the drug from reaching its target, changing or protecting the target, and modifying or inactivating the drug. Stewart and Costerton (2001) and Høiby et al. (2010) explain the tolerance of biofilms. Kumarasamy et al. (2010) reported the emergence of the NDM-1 resistance mechanism in India, Pakistan and the UK.

At the population level, Laxminarayan et al. (2013), in The Lancet Infectious Diseases, set out the need for global solutions, and Prestinaci, Pezzotti and Pantosti (2015) describe AMR as a multifaceted global phenomenon.

Between the two sits genomic surveillance, which depends on curated databases of resistance genes. Those resource papers are heavily cited because they are methods.

Main debates

How big is the burden, and how should it be counted? Murray et al. (2022) present what they describe as the most comprehensive estimates to date and distinguish deaths associated with resistant infection from deaths attributable to resistance. The two figures rest on different counterfactuals, and the estimates are modelled for every location, including those with no data, so read the methods before quoting them. A second question is where resistance comes from: Davies and Davies (2010) attribute it to antibiotic use in clinical, agricultural and other settings and call for more work on environmental microbiomes, which Larsson and Flach (2022) review.

Where recent work is heading

Recent highly cited work includes the updated burden estimates with forecasts (Naghavi et al., 2024), environmental reservoirs (Larsson and Flach, 2022), an update on molecular mechanisms (Darby et al., 2023) and overviews of the most critical pathogens (Mancuso et al., 2021).

Most-cited foundational papers

Published before 2021 and ranked by how often later work cites them. Read the abstract of each and the full text of the three or four closest to your question. Citation count measures attention, not quality, so treat this as a map of what the field has argued about rather than a ranking of what is true.

  1. 1
    Origins and Evolution of Antibiotic Resistance

    Julian Davies, Dorothy Davies (2010). Microbiology and Molecular Biology Reviews.

    Cited by 5,858Open accessdoi:10.1128/mmbr.00016-10

  2. 2
    Identification of acquired antimicrobial resistance genes

    E. Zankari and 7 others (2012). Journal of Antimicrobial Chemotherapy.

    Cited by 5,241Open accessdoi:10.1093/jac/dks261

  3. 3
    Antibiotic resistance of bacteria in biofilms

    Philip S Stewart, J William Costerton (2001). The Lancet.

    Cited by 4,597doi:10.1016/s0140-6736(01)05321-1

  4. 4
    Antibiotic resistance—the need for global solutions

    Ramanan Laxminarayan and 25 others (2013). The Lancet Infectious Diseases.

    Cited by 4,506Open accessdoi:10.1016/s1473-3099(13)70318-9

  5. 5
    Molecular mechanisms of antibiotic resistance

    Jessica M. A. Blair and 4 others (2015). Nature Reviews Microbiology.

    Cited by 4,084doi:10.1038/nrmicro3380

  6. 6
    CARD 2020: antibiotic resistome surveillance with the comprehensive antibiotic resistance database

    Brian P Alcock and 33 others (2019). Nucleic Acids Research.

    Cited by 3,370Open accessdoi:10.1093/nar/gkz935

  7. 7
    Antimicrobial resistance: a global multifaceted phenomenon

    Francesca Prestinaci, Patrizio Pezzotti, Annalisa Pantosti (2015). Pathogens and Global Health.

    Cited by 3,347Open accessdoi:10.1179/2047773215y.0000000030

  8. 8
    Antibiotic resistance of bacterial biofilms

    Niels Høiby and 4 others (2010). International Journal of Antimicrobial Agents.

    Cited by 3,275doi:10.1016/j.ijantimicag.2009.12.011

  9. 9
    Emergence of a new antibiotic resistance mechanism in India, Pakistan, and the UK: a molecular, biological, and epidemiological study

    Karthikeyan K Kumarasamy and 30 others (2010). The Lancet Infectious Diseases.

    Cited by 2,938Open accessdoi:10.1016/s1473-3099(10)70143-2

  10. 10
    CARD 2017: expansion and model-centric curation of the comprehensive antibiotic resistance database

    Baofeng Jia and 22 others (2017). Nucleic Acids Research.

    Cited by 2,865Open accessdoi:10.1093/nar/gkw1004

Most-cited papers since 2021

Primary studies and conceptual papers from 2021 onwards. A paper published in 2024 has had a few years to accumulate citations where the works in the section above have had decades, so compare these counts with each other rather than with the ones above.

  1. 1
    CARD 2023: expanded curation, support for machine learning, and resistome prediction at the Comprehensive Antibiotic Resistance Database

    Brian P Alcock and 44 others (2023). Nucleic Acids Research.

    Cited by 2,390Open accessdoi:10.1093/nar/gkac920

  2. 2
    Antimicrobial Resistance: A Growing Serious Threat for Global Public Health

    Md. Abdus Salam and 6 others (2023). Healthcare.

    Cited by 1,946Open accessdoi:10.3390/healthcare11131946

  3. 3
    AMRFinderPlus and the Reference Gene Catalog facilitate examination of the genomic links among antimicrobial resistance, stress response, and virulence

    Michael Feldgarden and 11 others (2021). Scientific Reports.

    Cited by 1,722Open accessdoi:10.1038/s41598-021-91456-0

  4. 4
    Pseudomonas aeruginosa: pathogenesis, virulence factors, antibiotic resistance, interaction with host, technology advances and emerging therapeutics

    Shugang Qin and 8 others (2022). Signal Transduction and Targeted Therapy.

    Cited by 1,503Open accessdoi:10.1038/s41392-022-01056-1

  5. 5
    Bacterial Antibiotic Resistance: The Most Critical Pathogens

    Giuseppe Mancuso and 3 others (2021). Pathogens.

    Cited by 1,364Open accessdoi:10.3390/pathogens10101310

  6. 6
    Antibiotic resistance in microbes: History, mechanisms, therapeutic strategies and future prospects

    Tanvir Mahtab Uddin and 11 others (2021). Journal of Infection and Public Health.

    Cited by 1,328Open accessdoi:10.1016/j.jiph.2021.10.020

  7. 7
    Antimicrobial Resistance (AMR)

    Ka Wah Kelly Tang, Beverley C. Millar, John E. Moore (2023). British Journal of Biomedical Science.

    Cited by 994Open accessdoi:10.3389/bjbs.2023.11387

  8. 8
    Antibiotic resistance: The challenges and some emerging strategies for tackling a global menace

    David Chinemerem Nwobodo and 6 others (2022). Journal of Clinical Laboratory Analysis.

    Cited by 991Open accessdoi:10.1002/jcla.24655

Recent reviews and meta-analyses

The fastest way into a literature. A good review gives you the structure of the field, a reference list to mine and, in its limitations section, the gaps other researchers have already spotted.

  1. 1
    Global burden of bacterial antimicrobial resistance in 2019: a systematic analysis

    Christopher J L Murray and 174 others (2022). The Lancet.

    Cited by 16,368Open accessdoi:10.1016/s0140-6736(21)02724-0

  2. 2
    Global burden of bacterial antimicrobial resistance 1990–2021: a systematic analysis with forecasts to 2050

    Mohsen Naghavi and 524 others (2024). The Lancet.

    Cited by 3,626Open accessdoi:10.1016/s0140-6736(24)01867-1

  3. 3
    Antibiotic resistance in the environment

    D. G. Joakim Larsson, Carl-Fredrik Flach (2022). Nature Reviews Microbiology.

    Cited by 3,077Open accessdoi:10.1038/s41579-021-00649-x

  4. 4
    Molecular mechanisms of antibiotic resistance revisited

    Elizabeth M. Darby and 6 others (2023). Nature Reviews Microbiology.

    Cited by 1,395doi:10.1038/s41579-022-00820-y

  5. 5
    Origin of Antibiotics and Antibiotic Resistance, and Their Impacts on Drug Development: A Narrative Review

    Ghazala Muteeb and 3 others (2023). Pharmaceuticals.

    Cited by 1,055Open accessdoi:10.3390/ph16111615

  6. 6
    Microbial Biofilm: A Review on Formation, Infection, Antibiotic Resistance, Control Measures, and Innovative Treatment

    Satish Sharma and 5 others (2023). Microorganisms.

    Cited by 989Open accessdoi:10.3390/microorganisms11061614

How big the literature is, and where it is published

OpenAlex indexes 74,223 works whose title matches this topic. The chart shows how many were published each year from 2000 to 2025; the current year is left out because it is incomplete.

2000: 520 works52020002001: 528 works2002: 540 works2003: 583 works2004: 676 works2005: 757 works2006: 812 works2007: 1,015 works2008: 976 works2009: 1,188 works2010: 1,174 works2011: 1,444 works2012: 1,500 works2013: 1,727 works2014: 1,922 works2015: 2,016 works2016: 2,510 works2017: 2,854 works2018: 3,150 works2019: 3,630 works2020: 4,274 works2021: 4,479 works2022: 4,838 works2023: 5,208 works2024: 6,052 works2025: 8,030 works8,0302025
Show the numbers as a table
YearWorks
2000520
2001528
2002540
2003583
2004676
2005757
2006812
20071,015
2008976
20091,188
20101,174
20111,444
20121,500
20131,727
20141,922
20152,016
20162,510
20172,854
20183,150
20193,630
20204,274
20214,479
20224,838
20235,208
20246,052
20258,030

Journals behind the most-cited work

Counted across the 192 most-cited works on the topic, not across everything published. Browsing recent issues of the first two or three is a reliable way to find current work that has not yet been cited much.

Sub-topics to narrow into

A thesis-sized question usually sits inside one of these, combined with a population or a setting.

How to cite these papers

Every paper above has a DOI, a part of the reference that is easy to leave out. Here is one of them, “Origins and Evolution of Antibiotic Resistance” (2010), in the two styles students ask about most:

APA 7th edition

Davies, J., & Davies, D. (2010). Origins and evolution of antibiotic resistance. Microbiology and Molecular Biology Reviews, 74(3), 417–433. https://doi.org/10.1128/mmbr.00016-10

MLA 9th edition

Davies, Julian, and Dorothy Davies. “Origins and Evolution of Antibiotic Resistance.” Microbiology and Molecular Biology Reviews, vol. 74, no. 3, 2010, pp. 417–33, https://doi.org/10.1128/mmbr.00016-10.

Check the details against the article itself before you submit: databases, including the one behind this page, sometimes carry the online-first year rather than the volume year. Full rules and more examples are in our guides to APA, MLA, Chicago, Harvard, Vancouver and ABNT, with the rest in the citation guides. You can also format a reference from its DOI with our free citation tools.

Frequently asked questions

How many deaths does antimicrobial resistance cause?

Murray et al. (2022) estimated that in 2019 about 4.95 million deaths were associated with bacterial AMR, of which 1.27 million were directly attributable to it. Naghavi et al. (2024) extend the series from 1990 to 2021 and forecast to 2050. Cite the attributable and associated figures separately, because they answer different questions.

Why are database papers among the most cited?

Tools such as ResFinder (Zankari et al., 2012), CARD (Jia et al., 2017; Alcock et al., 2019, 2023) and AMRFinderPlus (Feldgarden et al., 2021) are cited whenever a study uses them to identify resistance genes in sequence data. High citation counts here reflect use as a method, not influence as an argument.

Antimicrobial or antibiotic resistance: which term should I search?

Antibiotic resistance refers to bacteria. Antimicrobial resistance is broader and also covers resistance in fungi, viruses and parasites; it is the term used by the WHO, whose fact sheet (https://www.who.int/news-room/fact-sheets/detail/antimicrobial-resistance) says AMR occurs when bacteria, viruses, fungi and parasites do not respond to antimicrobial medicines. Titles on this page use both terms, so search both.

How this page was made

The lists come from OpenAlex, an open index of scholarly works whose data are published under a CC0 licence, queried on September 21, 2026 for works whose title matches ("antimicrobial resistance" OR "antibiotic resistance"). Only works with a DOI are listed. Each one was checked against the publisher’s own record at Crossref or DataCite (title, year, first author, journal, volume and pages), and in three cases, where the publisher deposited no byline, against PubMed; anything OpenAlex or Crossref flags as retracted was left out, and an editor took out results that matched the words but not the subject. Citation counts are OpenAlex’s on that date and are usually lower than Google Scholar’s, which counts more kinds of document. Ranking by citations tells you what a field has relied on, not what is correct; several heavily cited papers on any topic are cited because later work disputes them. Books without a DOI are missing, which matters in fields where the founding text is a book.

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